#NB Don't forget the semi-colons at the end of every statement! ## ALIGNMENT FILE ## # the name of your phylip alignment alignment = delsuc.phy; ## BRANCHLENGTHS: linked | unlinked ## branchlengths = linked; ## MODELS OF EVOLUTION (e.g. GTR): all | raxml | mrbayes | ## models = mrbayes; # MODEL SELECCTION: AIC | AICc | BIC # model_selection = BIC; ## DATA BLOCKS: see manual for how to define ## [data_blocks] ADRA2B_1 = 1 - 1158\3; ADRA2B_2 = 2 - 1158\3; ADRA2B_3 = 3 - 1158\3; BRCA1_1 = 1159 - 3951\3; BRCA1_2 = 1160 - 3951\3; BRCA1_3 = 1161 - 3951\3; VWF_1 = 3952 - 5113\3; VWF_2 = 3953 - 5113\3; VWF_3 = 3954 - 5113\3; ## SCHEMES, search: all | user | greedy ## [schemes] search = greedy; #user schemes go here if search=user. See manual for how to define.#